Does anyone know how to edit reads after alignment has been done using gsAmplicon software? I want to go back and edit any variants that I know are sequencing errors.
Announcement
Collapse
No announcement yet.
X
-
I just found that there is no function to edit reads on the 454 software. Does anyone know a program that would allow me to edit reads post alignment. I dont want filter out the reads completely, I want to be able to edit the errors and use them for alignment and analysis.
-
Originally posted by Zaag View PostWell if that really is what you want you could go from sff to fasta, alter the fasta and go back to sff. You can use the sfftools/sffinfo provided by Roche.
Comment
Latest Articles
Collapse
-
by seqadmin
At the intersection of cytogenetics and genomics lies the exciting field of cytogenomics. It focuses on studying chromosomes at a molecular scale, involving techniques that analyze either the whole genome or particular DNA sequences to examine variations in structure and behavior at the chromosomal or subchromosomal level. By integrating cytogenetic techniques with genomic analysis, researchers can effectively investigate chromosomal abnormalities related to diseases, particularly...-
Channel: Articles
09-26-2023, 06:26 AM -
-
by seqadmin
Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...-
Channel: Articles
09-07-2023, 11:15 PM -
ad_right_rmr
Collapse
News
Collapse
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, 09-29-2023, 09:38 AM
|
0 responses
12 views
0 likes
|
Last Post
by seqadmin
09-29-2023, 09:38 AM
|
||
Started by seqadmin, 09-27-2023, 06:57 AM
|
0 responses
13 views
0 likes
|
Last Post
by seqadmin
09-27-2023, 06:57 AM
|
||
Started by seqadmin, 09-26-2023, 07:53 AM
|
0 responses
30 views
0 likes
|
Last Post
by seqadmin
09-26-2023, 07:53 AM
|
||
Multiplexed Biomarker Detection with Nanopore Technology: A Leap in Precision Diagnostics
by seqadmin
Started by seqadmin, 09-25-2023, 07:42 AM
|
0 responses
18 views
0 likes
|
Last Post
by seqadmin
09-25-2023, 07:42 AM
|
Comment