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  • andpet
    Member
    • Jul 2008
    • 27
    #1

    Outlier in Newbler

    Hi,

    we sequenced a part of a plant chromosome and tried to assemble the 454 reads with Newbler. Beside there were too few reads to cover the chromosome and many seem to come from repeat regions there are 20 % which are according to 454ReadStatus.txt outlier.

    What is a outlier ? Can anyone explain under wich criteria a read is a outlier ? I looked for the term "outlier" in the manual and found only that these reads are somewhat problematic ...

    Cheers,
    Andreas
    Tags: None
    • [c]oma
      Junior Member
      • Nov 2008
      • 5
      #2
      Hello Andreas,

      please see the attached powerpoint slide I got from Roche in response to the same question.
      Attached Files

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        • karenchu
          Junior Member
          • Jul 2011
          • 2
          #3
          that .ppt attachment is really useful


          ---
          Action Plan Of GSM Repeater
          GSM Repeater 900Mhz
          Last edited by karenchu; 07-14-2014, 05:57 AM.

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