Hello
Has anyone here ever changed the parameters used by gsMapper when mapping their read data to a reference genome? If so, can anyone elaborate on what "minimum overlap length" and "alignment identity score" means?
(the definition in the manual is far too little) ![Roll Eyes (Sarcastic)](https://www.seqanswers.com/core/images/smilies/rolleyes.png)
Cheers
Layla
Has anyone here ever changed the parameters used by gsMapper when mapping their read data to a reference genome? If so, can anyone elaborate on what "minimum overlap length" and "alignment identity score" means?
![EEK!](https://www.seqanswers.com/core/images/smilies/eek.png)
![Roll Eyes (Sarcastic)](https://www.seqanswers.com/core/images/smilies/rolleyes.png)
Cheers
Layla
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