sfffile converting quality values

[andpet]

Hi,

has anyone experience with the -r option of the Roche tool sfffile ? According to the manual this convertes old quality values into Phred-like values using a quality lookup table.

Well, I tried to convert old GS20 quality values and the tool fails to find the table:

"The rescore option was specified, but cannot find rescore config. file (quality score lookup table)."

I think I found the tables in the config directory of the Roche software (qualityScoreLookup_gs20.dat) but I don't know how to tell the tool where to look for this table.

Has anyone an idea ?

Thanks,

Andreas

[kmcarr]

According to the technical bulletin accompanying patch 2.0.0.20-1 this was due to a bug in the original release of the v2.0 software. Installing the patch should resolve the issue.

[andpet]

Patching solved the problem ...

Thanks,

Andreas