Hello,
I apologize if my question is redundant....
I created bam files from fastq files by ELAND_standalone and tried to feed them to GATK. Then I got the following error message.
##### ERROR MESSAGE: SAM/BAM file reanalysis.bam is malformed: SAM file doesn't have any read groups defined in the header. The GATK no longer supports SAM files without read groups
##### ERROR -
How can I change the header? Samtools?
Thank you very much.
Hiroki
I apologize if my question is redundant....
I created bam files from fastq files by ELAND_standalone and tried to feed them to GATK. Then I got the following error message.
##### ERROR MESSAGE: SAM/BAM file reanalysis.bam is malformed: SAM file doesn't have any read groups defined in the header. The GATK no longer supports SAM files without read groups
##### ERROR -
How can I change the header? Samtools?
Thank you very much.
Hiroki
Comment