Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • labmtl
    Junior Member
    • Mar 2011
    • 2

    #1

    Help interpretation indel

    Hello, I am new on the website and i would like to know if someone could help me with the interpretation of some results. I did not find enough information on the following inks:

    http://samtools.sourceforge.net/pileup.shtml


    http://samtools.sourceforge.net/cns0.shtml

    I am looking for insertion deletion. Here are the example of 2 samples.

    sample1 56 * */+CTT 87 87 37 9 * =+CTT 7 2 0 0 0
    sample2 56 * =+CTT/+CTT 25 1291 37 21 =+CTT * 18 3 0 0 0

    For sample 1, I understand that there are 7 reads on 9 that agree with the insertion of CTT at position 56 while 3 did not.
    For samples 2 I understand that there are 18 reads on 21 that agree with the insertion of CTT at position 56 while 3 did not.
    I do not inderstand what is the difference between "*/+CTT" and "=+CTT/+CTT"
    Moreover i do not understand why in sample 1, in the column 9 there is a "*" and then in column 10 it is written "=+CTT", while for sample 2 , in column 9 it is written "=+CTT" and then in column 10 "*". What is the difference?

    If you know also a website were i could see examples, that would be also great, Thank you
    I would really appreciate if someone could help me, thank you so much
    Best regards
    Labmtl

Latest Articles

Collapse

  • SEQadmin2
    Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
    by SEQadmin2



    Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

    Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
    ...
    Today, 09:55 AM
  • SEQadmin2
    New Genomics Technologies Take Aim at Long-Standing Limits
    by SEQadmin2


    Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

    We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
    ...
    09-28-2026, 10:25 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, Today, 05:39 AM
0 responses
10 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, Yesterday, 09:56 AM
0 responses
12 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-09-2026, 11:14 AM
0 responses
26 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 09-29-2026, 09:51 AM
0 responses
77 views
0 reactions
Last Post SEQadmin2  
Working...