Analyzing IonTorrent data

jobinjkattoor

Junior Member

Join Date: Feb 2023

Posts: 1
- Share
- Tweet
#1

Analyzing IonTorrent data

02-05-2023, 10:53 PM

Hi,
I am new here. I have been working with Ion torrent for the last one year. But I generally use Geneious prime software for my regular analysis, and I would like to use analysis tools like Kraken2 and similar tools to find bacterial contamination in my sample results. Can anyone help me find where to read about this, or does anyone have any links from which I can have a user interface of Kraken2? I am not a tech wiz and am not good with command-line tools.

Thanks in advance.
Tags: None
Ben3

Member

Join Date: Sep 2022

Posts: 40
- Share
- Tweet
#2

02-14-2023, 12:40 PM

Hey jobinjkattoor, what sort of questions did you have about Kraken 2? They do have some additional info on this GitHub page you could check out.

I'm not an expert on Kraken 2 but maybe I could point you in the right direction.
Comment

Previous template Next

Improved Targeted Sequencing: A Comprehensive Guide to Amplicon Sequencing

by seqadmin

Amplicon sequencing is a targeted approach that allows researchers to investigate specific regions of the genome. This technique is routinely used in applications such as variant identification, clinical research, and infectious disease surveillance. The amplicon sequencing process begins by designing primers that flank the regions of interest. The DNA sequences are then amplified through PCR (typically multiplex PCR) to produce amplicons complementary to the targets. RNA targets...
- Channel: Articles
Yesterday, 01:49 PM
Targeted Sequencing: Choosing Between Hybridization Capture and Amplicon Sequencing

by seqadmin

Targeted sequencing is an effective way to sequence and analyze specific genomic regions of interest. This method enables researchers to focus their efforts on their desired targets, as opposed to other methods like whole genome sequencing that involve the sequencing of total DNA. Utilizing targeted sequencing is an attractive option for many researchers because it is often faster, more cost-effective, and only generates applicable data. While there are many approaches...
- Channel: Articles
03-10-2023, 05:31 AM
Expert Advice on Automating Your Library Preparations

by seqadmin

Using automation to prepare sequencing libraries isn’t a new concept, and most researchers are aware that there are numerous benefits to automating this process. However, many labs are still hesitant to switch to automation and often believe that it’s not suitable for their lab. To combat these concerns, we’ll cover some of the key advantages, review the most important considerations, and get real-world advice from automation experts to remove any lingering anxieties....
- Channel: Articles
02-21-2023, 02:14 PM

Topics	Statistics	Last Post
Study Elucidates Biology of Ancient Nanobacteria by seqadmin Started by seqadmin, 03-17-2023, 12:32 PM	0 responses 12 views 0 likes	Last Post by seqadmin 03-17-2023, 12:32 PM
Microfluidics-free Method for Single-Cell Sequencing by seqadmin Started by seqadmin, 03-15-2023, 12:42 PM	0 responses 18 views 0 likes	Last Post by seqadmin 03-15-2023, 12:42 PM
Improving Single-Cell RNA Sequencing in Bacteria with Automation and Cas9 by seqadmin Started by seqadmin, 03-09-2023, 10:17 AM	0 responses 67 views 1 like	Last Post by seqadmin 03-09-2023, 10:17 AM
New Sequencing Method for Characterizing Meiotic Double-Stranded Breaks by seqadmin Started by seqadmin, 03-03-2023, 12:03 PM	0 responses 64 views 0 likes	Last Post by seqadmin 03-03-2023, 12:03 PM

Header Leaderboard Ad

Analyzing IonTorrent data

Announcement

Analyzing IonTorrent data

Comment

Latest Articles

ad_right_rmr

News