Hello,
I have some pacbio reads which I have aligned to a reference sequence using blasr. I can see the resulting alignment in igv with the help of samtools and it works fine.
What I would like is a simple way of recovering the consensus sequence that results from this alignment. I can see any simple way of doing this. Is there one?
Thanks a lot for your help?
I have some pacbio reads which I have aligned to a reference sequence using blasr. I can see the resulting alignment in igv with the help of samtools and it works fine.
What I would like is a simple way of recovering the consensus sequence that results from this alignment. I can see any simple way of doing this. Is there one?
Thanks a lot for your help?
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