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  • cmm8cmm8
    Junior Member
    • Nov 2008
    • 9

    #1

    Small RNA Pipeline

    I am running a small RNA project for the first time, and I am curious if anyone knows where I can get a multi-FASTA file containing the sequences to be removed during the filtering step (rRNA, tRNA, adaptor sequences). My project involves human samples.
  • Rao
    Member
    • Oct 2008
    • 36

    #2
    You will get them from NCBI databases, and adapter sequences ..get them from vendor...(may from some documentation)...

    Comment

    • Sheila
      Member
      • Jun 2009
      • 17

      #3
      Hi,
      The dataset for the smallRNA pipeline includes this file (human_filter_reference.fasta)


      Sheila

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