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  • yamayaya
    Junior Member
    • Mar 2008
    • 6

    #1

    GC bias in Solid system?

    Does anybody know the GC bias problem when using solid system for more complicated genome sequencing. e.g. mammal?

    Is there any published paper talking about the substantial bias caused by GC content?

    Many thank~!
  • nilshomer
    Nils Homer
    • Nov 2008
    • 1283

    #2
    Originally posted by yamayaya View Post
    Does anybody know the GC bias problem when using solid system for more complicated genome sequencing. e.g. mammal?

    Is there any published paper talking about the substantial bias caused by GC content?

    Many thank~!
    I have analyzed GC bias on both SOLiD and Illumina for Human samples. While there is a bias, they both are comparable. PM me if you want some figures etc.

    Comment

    • NextGenSeq
      Senior Member
      • Apr 2009
      • 482

      #3
      By Covarising (if that's a word) at 2-5C ABI claims they eliminate GC bias.

      Comment

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