Tools to convert WTAP mapping results to nucleotide space?

[kchu]

Hello all,

I've got some mapping results with SOLiD's Whole Transcriptome Analysis pipeline (WTAP), and would like to convert the mapped color reads back to nucleotide space.

This can be done for CoronaLite mapping results with MaToGff.sh and AnnotationChanges.sh (using the -b option). But I have been unable to find the counterparts of these tools for WTAP mapping results. Does such a color-to-nucleotide conversion tool exist for WTAP mapped reads?

Thanks.