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SEQanswers June Challenge Has Begun!

The competition has begun! We're giving away a $50 Amazon gift card to the member who answers the most questions on our site during the month. We want to encourage our community members to share their knowledge and help each other out by answering questions related to sequencing technologies, genomics, and bioinformatics. The competition is open to all members of the site, and the winner will be announced at the beginning of July. Best of luck!

For a list of the official rules, visit (https://www.seqanswers.com/forum/sit...wledge-and-win)
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  • .baf 2 BED

    Hello,

    .baf from BFAST alignment output to .BED format? Thanks.

    J

  • #2
    Originally posted by JohnK View Post
    Hello,

    .baf from BFAST alignment output to .BED format? Thanks.

    J
    There are many ways. You can convert the BAF file to the SAM/BAM format using the "bfast postprocess" option, which you should use anyways to prioritize alignments. Then you can write your own program or check out this thread to convert SAM/BAM to BED.

    Comment


    • #3
      I think it's time for a giant table of file formats..."I have" vs "I want"....

      Comment


      • #4
        Originally posted by ECO View Post
        I think it's time for a giant table of file formats..."I have" vs "I want"....
        That'd be huge.

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