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  • .baf 2 BED

    Hello,

    .baf from BFAST alignment output to .BED format? Thanks.

    J

  • #2
    Originally posted by JohnK View Post
    Hello,

    .baf from BFAST alignment output to .BED format? Thanks.

    J
    There are many ways. You can convert the BAF file to the SAM/BAM format using the "bfast postprocess" option, which you should use anyways to prioritize alignments. Then you can write your own program or check out this thread to convert SAM/BAM to BED.

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    • #3
      I think it's time for a giant table of file formats..."I have" vs "I want"....

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      • #4
        Originally posted by ECO View Post
        I think it's time for a giant table of file formats..."I have" vs "I want"....
        That'd be huge.

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