I am new to NGS and have some SOLiD data. I want to analyze them for miRNA expression. Previously I have used miRanalyzer and DSAP to analyze illumina data. The input file for these web-based tools was a file containing sequences of unique reads and their counts.
Is there any script publicly available to convert these csfasta files into unique read sequences (example given below)? I have read few threads here and they suggest not to convert csfasta files.
Any help will be highly appreciated.
Thank you.
I am looking to convert to the following format (tab separated file):
GAGGTAGTAGGTTGTA 123121
ACCCGTAGAACCGACC 23432
GGAGCATCTCTCGGTC 14323
Is there any script publicly available to convert these csfasta files into unique read sequences (example given below)? I have read few threads here and they suggest not to convert csfasta files.
Any help will be highly appreciated.
Thank you.
I am looking to convert to the following format (tab separated file):
GAGGTAGTAGGTTGTA 123121
ACCCGTAGAACCGACC 23432
GGAGCATCTCTCGGTC 14323