how to use SOAPdenovo to handle the Solid data.

[ryuky]

Hi everyone,
I'm curious about that whether the Solid data could be converted into fastq format just like solexa so that it can be handled by SOAPdenovo.
Would you please offer me a full framwork using SOAPdenovo to handle the Solid data include how to convert the format and so on.
thanks!

[schmima]

Would you please offer me a full framwork using SOAPdenovo to handle the Solid data include how to convert the format and so on.

you ask for quite a lot...

Haven't used SOAPdenovo (and I havent read the manual). However - for velvet&oases on SOLiD I posted a small "guide" (you can also use velvet without oases):

http://seqanswers.com/forums/showthread.php?t=3877

No idea if it will be helpful for SOAP - but it will work with velvet.