Announcement

Collapse
No announcement yet.

TopHat/ Cufflinks & ...EdgeR?

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • TopHat/ Cufflinks & ...EdgeR?

    Hello
    Can't seem to find a definite answer to this: Is EdgeR compatible with Cufflinks?
    (Im new to this & help is appreciated)
    Cheers
    Laura

  • #2
    edgeR works best with raw counts. You should use tools like featureCounts or HTSeq with it.

    Also, please note that there are a lot of newer software tools. Maybe you should take a look at tools like STAR, HISAT, StringTie, Kallisto, etc. to replace TopHat and Cufflinks.
    Last edited by shunyip; 02-16-2017, 12:29 PM.

    Comment

    Working...
    X