Hi all,
I am newbie in NGS data analysis and first task in it come to me is de novo assembly. I have plant mitochondrial genome to assemble...
13 results in 0.0054 seconds.
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de novo assembly using velvet and Amos
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amos2ace gives up at 2Gb?
Has anyone successfully converted an .afg assembly file (>= 3Gb) to .ace using amos2ace? I am unable to do this on a macbook pro (8 Gb RAM) as the... -
Hawkeye too slow to use on laptop
I've seen some passing mention of Hawkeye being too slow, and that is my current dilemma. I installed the latest AMOS (3.1.0) successfully on Mac OS...Last edited by Mike DS; 12-15-2013, 12:41 PM. -
minimus2 assembly merge
Hi folks,
I'm using minimus2 to merge two different assemblies - a long read (LRseq - moleculo data) assembly done w/ celera and an idba_ud... -
Looking at Velvet with Hawkeye, Amosvalidate
Hi
I have a velvet assembly that I want to validate, especially as it is very different (as judged by dot matrix) from what I think is the nearest... -
How to get assembly metrics from (AMOS) minimus and minimo assemblies?
Hi everybody!
Recently, I tried the assemblers minimus and minimo from the AMOS v3.1.0 package to assemble a bacteria de novo using 454... -
Generating input for Amosvalidate
Hi,
I'm using ABySS to assemble 14 FASTQ PE files into a 300MB assembly. I wanted to use AmosValidate (http://bit.ly/pSVBr8) for validation... -
Editing assembly output of amos?
Hello Everyone,
I hope for the love of god that someone might be able to point me in the right direction.
Essentially, I... -
Minimus2 - dumpreads
Hi everybody here!
I'm trying to merge two de-novo assemblies of the same dataset, obtained with Newbler and Abyss. I'm using Minimus2.... -
amos bank-transact show err
Anyone tell me why ?
running:
bank-transact -c -b S1-S2.bnk -m S1-S2.afg
log file show:
AFG...Last edited by bah; 02-22-2011, 01:35 PM. -
minimus2 woes
I'm trying to merge an alignment to a reference sequence and a de novo assembly using the same Illumina reads. It seems like minimus2 would be the right... -
Minimus2/nucmer assembly
Hello,
I was wondering if anyone had enough experience with Minimus2 to tell me what its default handling of Ns was. I am attempting to... -
toAmos Out of Memory!
Hello everyone,
I'm analysing Solexa reads from a bacterial genome currently unavailable. As first step, of course, I'm trying to assemble...
