How to get assembly metrics from (AMOS) minimus and minimo assemblies?

[Estefania]

Hi everybody!

Recently, I tried the assemblers minimus and minimo from the AMOS v3.1.0 package to assemble a bacteria de novo using 454 Titanium reads.

However, although the assemblies finished ok (no errors reported) I couldn't find out an assembly metrics file like when using Newbler (454NewblerMetrics.txt) or Mira (bacteria_info_assembly.txt).

Does anybody knows how to obtain this data from these assemblers (minimus and minimo)?

Thank you very much in advance.

Regards,

Estefi

[Ole]

Not all assemblers output as detailed information as Newbler does, but I've been using the assemblathon_stats.pl script (http://assemblathon.org/assemblathon...sembly-metrics), to get the basic info about N50, mean, longest, etc., from my assemblies.