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Genomic Map Reveals How Animal Chromosomes Evolve Along Fixed Paths
A study published in Science Advances by researchers at the University of Vienna maps how genome architecture has been reshuffled across the animal kingdom,... -
Environmental Genomics in the Age of NGS: From Microbes to Conservation Strategies
Studying ecosystems means dealing with complex, multi-species communities that are hard to observe at scale. This complexity, however, hides many important questions to be answered, from how biogeochemical cycles work and how climate change can affect species distribution to how conservation strategies can work best.
Genomics, particularly since the expansion of NGS, has transformed ecosystem ecology. By sequencing environmental DNA, we can now assess biodiversity without direct...Last edited by SEQadmin2; 05-28-2026, 03:29 AM. -
Tools for gene/pathway conervation analysis among genomes
I am interested in looking at a number of genes in 2 or 3 closely related eukaryotic genomes. I think interesting questions to answer would be:
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islands are in regions with low conservation
Hello, I´m trying to find virulence genes in my genome by using different islands tools. I found genomic islands that are located in regions with low... -
Pairwise alignment of multiple sequences
Hello, I would like to perform a pairwise alignment between 100 samples that each contain about 2,000 sequences from different genomic regions. What I... -
UCSC human conservation data
I am using GenomeGraphs and want to plot conservation scores alongside human gene regions. In the vignette, they use yeastCons1. Where would I get the... -
Conservation Scoring Across Motif Sites
Hi,
I am trying to figure out how to compute conservation of sequence in and around motif across multiple sites, but within the same species,... -
PhyloP LRT help
Hi everyone,
I am currently using phyloP LRT scores to look for conserved elements in plants. LRT = Likelihood Ratio Test. I want to find... -
Conservation scores for variants in VCF format
Hello all,
I have a VCF file containing changes in a population of Rattus norvegicus. I would like to rank these changes by the conservation... -
Measuring conservation for short motif
How can I measure sequence conservation among different species for a very short (5-8 nt) motif in introns?
I know I can visualize conservation...
