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  • iramai
    Junior Member
    • Mar 2018
    • 6

    #1

    Extract the coordinates of the gaps between peaks.

    Hi everybody, i'm new in SeQanswers.
    I have some sequencing data from GEO repository it is written like this:

    chr1 1 2001 int
    chr1 1001 3001 int
    chr1 2001 4001 int
    chr1 3001 5001 int
    chr1 4001 6001 int


    I would like to extract the gap coordinates that are not written, as:

    chr1 1 1001
    chr1 1001 2001
    chr1 2001 3001
    chr1 3001 4001


    Is it posible in command line?

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