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  • proteomania
    replied
    RNAmmer Prediction works fine, and 5.8S was intentionally excluded from the prediction, in the paper the authors wrote,

    "In eukaryotes, 5S, 5.8S and 28S rRNA exist in the large subunit, and 18S rRNA in the small subunit. The 5.8S is not considered in this work."

    Leave a comment:


  • rRNA identification tools or information PLEASE!

    Hi everybody,

    I identified in my genome (by blast) 1 contig which is the rRNA genome.

    Now, I am searching for tools able to tell me where is exactly all the different part: i mean the 18S/ITS1/5.8S/ITS2/28S...

    I tried with RNAmmer Prediction Server.
    It give me the 18S and the 28S but not the 5.8S so i guess it is a fake identification...

    Or do you have any information about the structure of the rRNA sequence?
    So i can find by myself the beginning and the end of each part...

    I couldn't found any information !!!!

    Thank you very much

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  • seqadmin
    Multiomics Techniques Advancing Disease Research
    by seqadmin


    New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

    A major leap in the field has
    ...
    02-08-2024, 06:33 AM

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