Hi
I have some single-end SOLiD data about 35bp. run TopHat.
There are some questions about TopHat. I use TopHat to produce accepted_hits.bam, but "Error Can't read file: accepted_hits.bam" in UCSC.
Cufflinks use SAM, however, TopHat produce BAM and not SAM.
How the maximal reads data is?
There is a question "Error: segment-based junction search failed with err = -11"
I look forward to everyone letter.
Thank you
I have some single-end SOLiD data about 35bp. run TopHat.
There are some questions about TopHat. I use TopHat to produce accepted_hits.bam, but "Error Can't read file: accepted_hits.bam" in UCSC.
Cufflinks use SAM, however, TopHat produce BAM and not SAM.
How the maximal reads data is?
There is a question "Error: segment-based junction search failed with err = -11"
I look forward to everyone letter.
Thank you
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