PEMer tool - rearrangements from short reads

[bioinfosm]

Anyone having experience using the tool?
I liked the tool, using off maq mapped reads to identify structural rearrangements, yielding a single line output.

However, I wish to verify and compare my experience with anyone else using this tool? Also, I am not able to decipher some of the output file formats ..

Thanks,
sm

[bioinfosm]

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