http://www.bioinformatics.bbsrc.ac.uk/projects/seqmonk/
SeqMonk is a visualisation and analysis package for mapped read data. It is designed to be easy to use and to provide a variety of tools to visualise your data against an annotated genome, quantitate it, filter out regions of interest and then create lists of regions of interest. We have been using this software as our primary analysis tool for over a year now on a variety of different types of experiment and it is still under active development.
SeqMonk is a cross platform tool and runs on Windows OSX and Linux. All you need to get started is some mapped data in a text file. It can directly read BED, GFF and Eland (sorted or export), but also has a generic import tool for other formats.
We have been running SeqMonk training courses for a while now, and all of our training material can also be downloaded from our site to help you get started.
We are happy to receive feedback about SeqMonk (either positive or negative!). Bug reports or enhancement requests can be put into our bugzilla database or sent directly to me.
SeqMonk is free software released under the GPL.
SeqMonk is a visualisation and analysis package for mapped read data. It is designed to be easy to use and to provide a variety of tools to visualise your data against an annotated genome, quantitate it, filter out regions of interest and then create lists of regions of interest. We have been using this software as our primary analysis tool for over a year now on a variety of different types of experiment and it is still under active development.
SeqMonk is a cross platform tool and runs on Windows OSX and Linux. All you need to get started is some mapped data in a text file. It can directly read BED, GFF and Eland (sorted or export), but also has a generic import tool for other formats.
We have been running SeqMonk training courses for a while now, and all of our training material can also be downloaded from our site to help you get started.
We are happy to receive feedback about SeqMonk (either positive or negative!). Bug reports or enhancement requests can be put into our bugzilla database or sent directly to me.
SeqMonk is free software released under the GPL.
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