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Have you done :
apt-get install python-dev ?
apt-get install python-dev ?
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Yes, I did it last week...Comment
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And did you do "python setup.py build_ext -i" after ?Comment
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Yes...
genmed13@genmed13-HP-Compaq-dc5800-Microtower:~/cutadapt-1.0$ python setup
.py build_ext -i
running build_extComment
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So i don't know, i has worked for me even with the ELF class error ...
Do you add cutadapt to your path ?Comment
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Ok, don't worry! thanks again!!
Au revoire!!
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Maybe I didn't add cutadapt to my path... how can I do it??Comment
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i think it's :
export PATH=$PATH:/path to cutadapt repertoryComment
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I have the same error messagge... thank againComment
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Ok so i don't understand ... sorry ...Comment
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I was having installation problems but I got it to work with the following (I'm using python2.7):
1. # Installed python-setuptools v0.6.34-0ubuntu1
2. # Installed pip with the commands:
curl -O https://raw.github.com/pypa/pip/mast...rib/get-pip.py
sudo python get-pip.py
3. # Installed cutadapt:
sudo pip install cutadaptComment
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how to install cutadapt
It only works in root...I did write this coding apt-get install python-devOriginally posted by StephaniePi83 View Post
and I got this
Reading package lists... Done
Building dependency tree
Reading state information... Done
python-dev is already the newest version.
The following packages were automatically installed and are no longer required:
language-pack-kde-en kde-l10n-engb language-pack-kde-en-base
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
after that I write this python setup.py build_ext -i
and then i got this msg
Cython is not installed and pre-compiled C sources
are also not available. You need to install Cython to continue.
after that I tried easy_install cython
and then again python setup.py build_ext -i
but getting the same msg that need to install cython so i tried with this code...easy_install cutadapt
and I am getting this msg
Processing cutadapt
error: Couldn't find a setup script in /home/singhparul/cutadapt-1.4.1/cutadapt
root@ubuntu:/home/singhparul/cutadapt-1.4.1# easy_install cutadapt-1.4.1
Searching for cutadapt-1.4.1
Reading http://pypi.python.org/simple/cutadapt-1.4.1/
Couldn't find index page for 'cutadapt-1.4.1' (maybe misspelled?)
Scanning index of all packages (this may take a while)
Reading http://pypi.python.org/simple/
No local packages or download links found for cutadapt-1.4.1
error: Could not find suitable distribution for Requirement.parse('cutadapt-1.4.1')
please suggest me somethingComment
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Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.07-01-2026, 11:43 AM
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I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...
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