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Have you done :
apt-get install python-dev ?
apt-get install python-dev ?
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Yes, I did it last week...Comment
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And did you do "python setup.py build_ext -i" after ?Comment
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Yes...
genmed13@genmed13-HP-Compaq-dc5800-Microtower:~/cutadapt-1.0$ python setup
.py build_ext -i
running build_extComment
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So i don't know, i has worked for me even with the ELF class error ...
Do you add cutadapt to your path ?Comment
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Ok, don't worry! thanks again!!
Au revoire!!
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Maybe I didn't add cutadapt to my path... how can I do it??Comment
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i think it's :
export PATH=$PATH:/path to cutadapt repertoryComment
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I have the same error messagge... thank againComment
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Ok so i don't understand ... sorry ...Comment
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I was having installation problems but I got it to work with the following (I'm using python2.7):
1. # Installed python-setuptools v0.6.34-0ubuntu1
2. # Installed pip with the commands:
curl -O https://raw.github.com/pypa/pip/mast...rib/get-pip.py
sudo python get-pip.py
3. # Installed cutadapt:
sudo pip install cutadaptComment
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how to install cutadapt
It only works in root...I did write this coding apt-get install python-devOriginally posted by StephaniePi83 View Post
and I got this
Reading package lists... Done
Building dependency tree
Reading state information... Done
python-dev is already the newest version.
The following packages were automatically installed and are no longer required:
language-pack-kde-en kde-l10n-engb language-pack-kde-en-base
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 15 not upgraded.
after that I write this python setup.py build_ext -i
and then i got this msg
Cython is not installed and pre-compiled C sources
are also not available. You need to install Cython to continue.
after that I tried easy_install cython
and then again python setup.py build_ext -i
but getting the same msg that need to install cython so i tried with this code...easy_install cutadapt
and I am getting this msg
Processing cutadapt
error: Couldn't find a setup script in /home/singhparul/cutadapt-1.4.1/cutadapt
root@ubuntu:/home/singhparul/cutadapt-1.4.1# easy_install cutadapt-1.4.1
Searching for cutadapt-1.4.1
Reading http://pypi.python.org/simple/cutadapt-1.4.1/
Couldn't find index page for 'cutadapt-1.4.1' (maybe misspelled?)
Scanning index of all packages (this may take a while)
Reading http://pypi.python.org/simple/
No local packages or download links found for cutadapt-1.4.1
error: Could not find suitable distribution for Requirement.parse('cutadapt-1.4.1')
please suggest me somethingComment
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Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
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