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  • kumtl
    Junior Member
    • May 2009
    • 8
    #1

    Any suggestion for Chip-Seq analysis?

    Hi! All,

    I'm a newbie for Chip-Seq analysis.
    As you guys already know, there are a bunch of software to analyze Chip-Seq data, but I don't know which software is the best up to now. I did some literature search and find "QESEQ" is warranted.

    Any other suggestion?
    Thanks in advance.

    -Kumtl
    Tags: algorithms, chip-seq, hiseq2000, paired end
    • pmad
      Bioinformatics Engineer
      • Jun 2010
      • 14
      #2
      Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, et al. (2013) Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 9(11): e1003326. doi:10.1371/journal.pcbi.1003326

      http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003326

      PubMed, PMC
      Pedro Madrigal

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