I have a project that has done 1.5 plates worth of 454FLX (mixed paired end/single read) and subsequently done a SOLiD run.
The genome in question is ~11Mbp and has no reference to assemble to as its a non-model organism.
The 454 runs have been assembled with Newbler, but I'm interested in strategies and packages for combining the 454 and SOLiD data together.
Any pitfalls, protocols or papers I should be aware of?
Bukwoski
The genome in question is ~11Mbp and has no reference to assemble to as its a non-model organism.
The 454 runs have been assembled with Newbler, but I'm interested in strategies and packages for combining the 454 and SOLiD data together.
Any pitfalls, protocols or papers I should be aware of?
Bukwoski
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