Augustus with RNA-Seq

osvaldoreis

Junior Member

Join Date: May 2010

Posts: 2
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#1

Augustus with RNA-Seq

07-05-2010, 12:54 PM

Hey guys, I'm new with bioinformatics and I'm currently working with gene prediction. I would like to know if has someone here that ever use Augustus with RNA-Seq and if got a good result? I already ran, but my results don't seen to be good.

Ty
Tags: augustus, gene prediction, rna-seq, solexa
steven

Senior Member

Join Date: Aug 2009

Posts: 269
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#2

07-06-2010, 09:34 AM

Originally posted by osvaldoreis View Post

Hey guys, I'm new with bioinformatics and I'm currently working with gene prediction. I would like to know if has someone here that ever use Augustus with RNA-Seq and if got a good result? I already ran, but my results don't seen to be good.

Ty

Maybe try geneid instead, i know they worked on a specific NGS version for the RGASP project.
Also, you can check out Cufflinks for instance, or Scripture.

Last edited by steven; 07-06-2010, 09:37 AM. Reason: adding stuff
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