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  • shashankgupta
    Member
    • Feb 2015
    • 35
    #1

    RAST server annotation result to STAMP statistical software

    Hi,
    I have annotated the 5 bacterial genome using RAST server, can we take the output from RAST server and use it in a STAMP statistical software.

    What i am trying to say is If we use MG-RAST server, we can download the table from it and use stamp for statistical analysis.

    Can we do such type of statistics with RAST server as well ?
    Tags: genome annotation, mg-rast, rast, statistical analysis
  • Polecat
    Member
    • Aug 2012
    • 11
    #2
    Yes you can make input profiles from MG-RAST and use them in STAMP. It tell you how to in the STAMP manual.

    Comment

    • utpal
      Junior Member
      • Feb 2014
      • 3
      #3
      open stamp

      click on create stamp profile

      search tsv file from ur computer

      make a the metafile in txt with the information of the genome like---

      3234324.3 happy
      2343434.3 happy
      1234234.3 unhappy
      1232312.3 unhappy

      use this file as the category to compare.


      next
      upload the metafile and the stamp file

      Comment

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