RAST server annotation result to STAMP statistical software

[shashankgupta]

Hi,
I have annotated the 5 bacterial genome using RAST server, can we take the output from RAST server and use it in a STAMP statistical software.

What i am trying to say is If we use MG-RAST server, we can download the table from it and use stamp for statistical analysis.

Can we do such type of statistics with RAST server as well ?

[Polecat]

Yes you can make input profiles from MG-RAST and use them in STAMP. It tell you how to in the STAMP manual.

[utpal]

open stamp

click on create stamp profile

search tsv file from ur computer

make a the metafile in txt with the information of the genome like---

3234324.3 happy
2343434.3 happy
1234234.3 unhappy
1232312.3 unhappy

use this file as the category to compare.


next
upload the metafile and the stamp file