Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • NearyJL78
    Member
    • Feb 2011
    • 14

    #1

    Promoter regions hg19

    Does anyone know of a downloadable data set that lists all of the predicted promoter regions in the human genome? I understand promoters can be defined in different ways, but that is unimportant as long as I know how the data set was defined.

    Or...

    Does anyone know how I might generate something like this relatively easily? a BED file would be optimal but I'll take what I can get

    Thanks!
  • steven
    Senior Member
    • Aug 2009
    • 269

    #2
    One way:
    UCSC table browser
    Group: Gene tracks, track: RefSeq (or UCSC known, or ensembl)
    Region: genome, output BED.
    Click on "get output" then on the next page select "Upstream by" and define yourself the genomic flank you consider as promoter region.

    Also, if you enter "download" and "promoter" in the Search window of this forum (upper bar) you will find this complete thread

    Comment

    • NearyJL78
      Member
      • Feb 2011
      • 14

      #3
      Thanks steven!

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by SEQadmin2




        NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
        Today, 06:46 AM
      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-28-2026, 09:57 AM
      0 responses
      22 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-28-2026, 09:51 AM
      0 responses
      14 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      68 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      48 views
      0 reactions
      Last Post SEQadmin2  
      Working...