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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
FPKM and discordant pairs by westeros
Started by westeros, 09-26-2013, 05:14 AM
0 responses
1,659 views
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 Last Post westeros
by westeros
09-26-2013, 05:14 AM  
het/hom ratio of exome samples by yl01
Started by yl01, 09-20-2013, 01:08 AM
1 response
4,210 views
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 Last Post yl01
by yl01
09-26-2013, 03:52 AM  
DNase-seq footprinting by jpiper
Started by jpiper, 09-26-2013, 03:08 AM
0 responses
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 Last Post jpiper
by jpiper
09-26-2013, 03:08 AM  
How to cluster samples with PCA in R? by rozitaa
Started by rozitaa, 09-25-2013, 02:10 AM
3 responses
3,928 views
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 Last Post Jeremy
by Jeremy
09-25-2013, 07:01 PM  
Mapping applications on Hadoop cluster by Ashwinub
Started by Ashwinub, 09-25-2013, 04:54 PM
0 responses
1,781 views
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 Last Post Ashwinub
by Ashwinub
09-25-2013, 04:54 PM  
Can Crossbow work with local fasta data? by Ashwinub
Started by Ashwinub, 09-25-2013, 04:43 PM
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 Last Post Ashwinub
by Ashwinub
09-25-2013, 04:43 PM  
How to identify the secretion system in a newly sequenced bacterial genome? by ontheway
Started by ontheway, 10-12-2012, 05:56 AM
4 responses
2,354 views
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 Last Post milo0615
by milo0615
09-25-2013, 02:48 PM  
Dindel empty variant result file by land_NGS
Started by land_NGS, 04-27-2011, 10:40 AM
3 responses
4,757 views
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 Last Post Jane Flora
by Jane Flora
09-25-2013, 01:57 PM  
Bowtie2: mapping qualities in paired end mode different with the single mode by bill_clinton
Started by bill_clinton, 09-25-2013, 09:06 AM
1 response
3,284 views
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 Last Post dpryan
by dpryan
09-25-2013, 11:47 AM  
100 genome phylogeny by mdk308
Started by mdk308, 09-24-2013, 01:59 PM
4 responses
3,537 views
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 Last Post mdk308
by mdk308
09-25-2013, 11:32 AM  
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