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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc
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Started by laura, 05-09-2011, 04:42 AM
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35 responses
107,333 views
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by laura
12-05-2013, 02:37 AM
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Started by sci_guy, 01-23-2008, 11:19 PM
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236 responses
683,046 views
1 reaction
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by ECO
12-25-2009, 06:45 PM
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Started by brentonmar, 08-07-2013, 05:37 AM
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1 response
2,703 views
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by chrisamiller
08-08-2013, 05:56 AM
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Started by CHObot, 07-26-2013, 01:37 PM
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5 responses
4,764 views
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by mastal
08-08-2013, 03:04 AM
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Started by rndouglas, 11-01-2012, 05:02 AM
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3 responses
2,569 views
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by jp.
08-08-2013, 02:30 AM
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Started by spidermonkey, 01-15-2013, 07:31 PM
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3 responses
2,863 views
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by jp.
08-08-2013, 02:28 AM
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Started by ywlim, 08-01-2011, 09:27 AM
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8 responses
8,216 views
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by chipmonk
08-08-2013, 02:27 AM
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Started by Jiafen, 10-25-2012, 11:59 AM
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14 responses
11,455 views
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by dpryan
08-08-2013, 01:16 AM
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Started by dnusol, 11-10-2011, 04:12 AM
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15 responses
5,521 views
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by biomaseq
08-07-2013, 11:59 PM
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Started by LSC, 08-07-2013, 09:41 PM
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by LSC
08-07-2013, 09:41 PM
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Started by rubbertjes, 06-13-2013, 05:39 AM
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11 responses
13,693 views
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by pbluescript
08-07-2013, 06:31 PM
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Started by kfisch, 05-07-2013, 11:50 AM
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3 responses
3,458 views
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by catbus
08-07-2013, 03:25 PM
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by GATTACATLove this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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Channel: Articles
07-01-2026, 11:43 AM -
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by SEQadmin2
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...-
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by SEQadmin2
Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
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06-02-2026, 10:05 AM -
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Started by SEQadmin2, Yesterday, 11:05 AM
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Yesterday, 11:05 AM
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Started by SEQadmin2, 07-02-2026, 11:08 AM
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by SEQadmin2
07-02-2026, 11:08 AM
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Started by SEQadmin2, 06-30-2026, 05:37 AM
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by SEQadmin2
06-30-2026, 05:37 AM
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