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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
BLAST+ basic help by Tapi
Started by Tapi, 06-19-2013, 09:16 AM
3 responses
1,318 views
0 reactions
 Last Post cliffbeall
by cliffbeall
06-19-2013, 12:54 PM  
Genome Gap Closing/Finishing Software by akjones
Started by akjones, 06-19-2013, 08:13 AM
2 responses
2,714 views
0 reactions
 Last Post GenoMax
by GenoMax
06-19-2013, 12:25 PM  
SAM spec / BWA-MEM by mozack
Started by mozack, 06-19-2013, 11:23 AM
1 response
4,909 views
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 Last Post BAMseek
by BAMseek
06-19-2013, 12:16 PM  
How to install Bowtie? by nkline
Started by nkline, 06-12-2013, 09:46 AM
15 responses
4,275 views
0 reactions
 Last Post GenoMax
by GenoMax
06-19-2013, 11:56 AM  
In DESeq, should one estimate sizeFactors and Dispersion in a pairwise fashion? by carmeyeii
Started by carmeyeii, 06-05-2013, 11:40 AM
4 responses
2,723 views
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 Last Post sdriscoll
by sdriscoll
06-19-2013, 10:56 AM  
Cufflinks missing transcript assembly in random genomic loci by swaraj
Started by swaraj, 06-19-2013, 10:48 AM
0 responses
1,718 views
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 Last Post swaraj
by swaraj
06-19-2013, 10:48 AM  
RepeatModeler by chrisbioinfo
Started by chrisbioinfo, 10-16-2012, 05:13 AM
15 responses
9,177 views
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 Last Post rhubley
by rhubley
06-19-2013, 10:11 AM  
Assessing RNA degradation in RNA-Seq by ruggedtextile
Started by ruggedtextile, 12-06-2012, 03:18 AM
3 responses
2,002 views
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 Last Post asiangg
by asiangg
06-19-2013, 09:39 AM  
Re-adding all reads in Consed by hnbc
Started by hnbc, 06-19-2013, 09:22 AM
0 responses
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 Last Post hnbc
by hnbc
06-19-2013, 09:22 AM  
Expression analysis using non-assembled reads? by MLog
Started by MLog, 06-13-2013, 10:25 AM
3 responses
1,664 views
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 Last Post peromhc
by peromhc
06-19-2013, 08:51 AM  
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