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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,261 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Extract reads with a specific mutation by desmo
Started by desmo, 01-21-2013, 03:28 AM
4 responses
2,916 views
0 reactions
 Last Post desmo
by desmo
01-22-2013, 12:57 AM  
CRAM compression and TLEN SAM's field by priesgo
Started by priesgo, 01-17-2013, 02:49 AM
5 responses
2,347 views
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 Last Post priesgo
by priesgo
01-22-2013, 12:10 AM  
about tophat and cufflinks(Need urgent) by Richard.Y
Started by Richard.Y, 01-21-2013, 11:03 PM
0 responses
1,105 views
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 Last Post Richard.Y
by Richard.Y
01-21-2013, 11:03 PM  
Why is ML/NJ phylogeny different from SNP tree? by Salmon
Started by Salmon, 01-13-2011, 08:27 AM
2 responses
3,952 views
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 Last Post A_Morozov
by A_Morozov
01-21-2013, 10:38 PM  
Help with edgeR by kvk727
Started by kvk727, 01-10-2013, 05:50 PM
1 response
1,766 views
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 Last Post Gordon Smyth
by Gordon Smyth
01-21-2013, 02:31 PM  
edgeR logFC up/down regulation by steve.eis
Started by steve.eis, 12-11-2012, 07:18 AM
3 responses
12,132 views
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 Last Post Gordon Smyth
by Gordon Smyth
01-21-2013, 02:16 PM  
BWASW doesn't complete by sgroenewold
Started by sgroenewold, 01-21-2013, 09:48 AM
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 Last Post sgroenewold
by sgroenewold
01-21-2013, 09:48 AM  
Sorting BAM by chromosome produces a much larger file. by aramadhan
Started by aramadhan, 01-18-2013, 11:49 AM
6 responses
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 Last Post etorstenson
by etorstenson
01-21-2013, 08:11 AM  
How to sort out cancer-specific snps from vcf file? by LI Jia
Started by LI Jia, 01-21-2013, 05:26 AM
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 Last Post LI Jia
by LI Jia
01-21-2013, 05:26 AM  
Available tumor-normal dataset with result (CNV, Snp and Indels) by desmo
Started by desmo, 01-10-2013, 02:56 AM
1 response
1,504 views
0 reactions
 Last Post LI Jia
by LI Jia
01-21-2013, 04:41 AM  
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