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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Jumping into bioinformatics by coiner
Started by coiner, 09-07-2012, 08:30 AM
5 responses
2,074 views
0 reactions
 Last Post krobison
by krobison
09-08-2012, 07:07 PM  
sliding window approach to find differentially methylated regions by maria_mari
Started by maria_mari, 04-13-2012, 06:49 AM
1 response
3,092 views
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 Last Post xfliwz
by xfliwz
09-08-2012, 05:44 PM  
an unreasonable snp by sally_hzau_citrus
Started by sally_hzau_citrus, 09-08-2012, 01:16 AM
0 responses
921 views
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 Last Post sally_hzau_citrus
by sally_hzau_citrus
09-08-2012, 01:16 AM  
metabolic pathway analysis (bacteria) -What software to use? by garethboy
Started by garethboy, 09-07-2012, 08:20 PM
0 responses
2,191 views
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 Last Post garethboy
by garethboy
09-07-2012, 08:20 PM  
DeSeq and EdgeR Annotation by Palgrave
Started by Palgrave, 09-06-2012, 01:05 AM
1 response
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 Last Post Gordon Smyth
by Gordon Smyth
09-07-2012, 05:55 PM  
duplicated reads in fastQC by JQL
Started by JQL, 09-05-2012, 02:23 PM
12 responses
6,241 views
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 Last Post JQL
by JQL
09-07-2012, 12:56 PM  
Recommendations for RNA-seq mapping for ABI/Illumina data-sets by thedavid
Started by thedavid, 08-27-2012, 12:28 PM
5 responses
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 Last Post mbblack
by mbblack
09-07-2012, 11:26 AM  
Questions about too many INV_Dupli detected by SVDetect (inverted duplication) by bioliyezhang
Started by bioliyezhang, 09-07-2012, 10:47 AM
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 Last Post bioliyezhang
by bioliyezhang
09-07-2012, 10:47 AM  
Unstranded Library RNAseq > Cufflinks --GTF by carmeyeii
Started by carmeyeii, 09-07-2012, 08:23 AM
0 responses
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 Last Post carmeyeii
by carmeyeii
09-07-2012, 08:23 AM  
Question about the bam file output by Tophat by fengqi
Started by fengqi, 09-07-2012, 07:10 AM
2 responses
1,489 views
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 Last Post fengqi
by fengqi
09-07-2012, 07:58 AM  
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