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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
SSAKE coverage output by cheng.msu
Started by cheng.msu, 07-07-2012, 05:44 PM
0 responses
1,660 views
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 Last Post cheng.msu
by cheng.msu
07-07-2012, 05:44 PM  
Differential gene expression analysis with bioreplicates using EdgeR/DESeq by iceage
Started by iceage, 07-04-2012, 05:08 AM
1 response
2,594 views
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 Last Post Gordon Smyth
by Gordon Smyth
07-07-2012, 04:58 PM  
splice-form aware input for DESeq/EdgeR/baySeq by Rachel Hillmer
Started by Rachel Hillmer, 06-27-2012, 08:40 AM
3 responses
2,232 views
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 Last Post Gordon Smyth
by Gordon Smyth
07-07-2012, 04:47 PM  
I would like to understand the effects of the end-to-end read mapping of bowtie1 by Rachel Hillmer
Started by Rachel Hillmer, 06-27-2012, 08:08 AM
2 responses
1,390 views
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 Last Post Rachel Hillmer
by Rachel Hillmer
07-06-2012, 03:20 PM  
Artificially reduce read lengths in FASTQ to mock-up different run parameters by swNGS
Started by swNGS, 07-06-2012, 10:35 AM
4 responses
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 Last Post swNGS
by swNGS
07-06-2012, 01:35 PM  
all variant sites in the human genome by ashkot
Started by ashkot, 07-06-2012, 10:00 AM
0 responses
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 Last Post ashkot
by ashkot
07-06-2012, 10:00 AM  
Dindel Realining Reads by bnfoguy
Started by bnfoguy, 06-26-2012, 09:20 AM
2 responses
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 Last Post bnfoguy
by bnfoguy
07-06-2012, 10:00 AM  
variant sites not listed in vcf by ashkot
Started by ashkot, 07-06-2012, 09:58 AM
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 Last Post ashkot
by ashkot
07-06-2012, 09:58 AM  
GATK for Complete Genomics Exome sequecning data by wzhang1001
Started by wzhang1001, 07-06-2012, 08:48 AM
0 responses
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 Last Post wzhang1001
by wzhang1001
07-06-2012, 08:48 AM  
hg 19 full and canonical by mathew
Started by mathew, 07-06-2012, 08:04 AM
0 responses
1,811 views
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 Last Post mathew
by mathew
07-06-2012, 08:04 AM  
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