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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Split long reads by Pol2021
Started by Pol2021, 07-20-2022, 06:53 AM
0 responses
174 views
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 Last Post Pol2021
by Pol2021
07-20-2022, 06:53 AM  
__too_low_aQual on htseq-count by onca
Started by onca, 07-13-2022, 06:43 AM
0 responses
225 views
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 Last Post onca
by onca
07-13-2022, 06:43 AM  
Automate your NGS data analyses and create reproducible pipelines with NextFlow by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 07-04-2022, 11:26 PM
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389 views
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
07-04-2022, 11:26 PM  
In-person RNA-Seq Data Analysis Workshop in Leipzig, Germany (October 25-28, 2022) by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 05-31-2022, 02:24 AM
3 responses
193 views
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
07-04-2022, 03:22 AM  
1000G fasta file for 30X high cover cram files by colinhercus
Started by colinhercus, 06-21-2022, 04:07 AM
2 responses
225 views
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 Last Post colinhercus
by colinhercus
06-29-2022, 12:37 AM  
Use your standard DNA variant caller for SNP calling in Bisulfite-Seq data by ecSeq Bioinformatics
Started by ecSeq Bioinformatics, 06-28-2022, 01:03 AM
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 Last Post ecSeq Bioinformatics
by ecSeq Bioinformatics
06-28-2022, 01:03 AM  
Different DESeq2 results (both FC and pvalue) by changing col/row orders in input by metheuse
Started by metheuse, 06-20-2022, 08:26 AM
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 Last Post metheuse
by metheuse
06-20-2022, 08:26 AM  
Different DESeq2 results (both FC and pvalue) by changing col/row orders in input by metheuse
Started by metheuse, 06-20-2022, 08:21 AM
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 Last Post metheuse
by metheuse
06-20-2022, 08:21 AM  
metagenomics; clean host reads first or assemble first? by szy0931
Started by szy0931, 06-19-2022, 06:03 AM
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 Last Post szy0931
by szy0931
06-19-2022, 06:03 AM  
FastQC output by Bowser86
Started by Bowser86, 06-13-2022, 12:57 AM
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 Last Post Bowser86
by Bowser86
06-13-2022, 12:57 AM  
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    Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
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    The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
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  • SEQadmin2
    16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
    by SEQadmin2





    NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
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    Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
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    Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

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by SEQadmin2
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 Last Post kinpict.com
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