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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Mapping to Genome vs Transcriptome? by boilermaker
Started by boilermaker, 02-19-2016, 01:40 PM
2 responses
4,814 views
0 reactions
 Last Post boilermaker
by boilermaker
02-19-2016, 05:19 PM  
Installation of rnammer-1.2 for Trinnoate: which version Perl XML/Simple.pm is requir by gwilymh
Started by gwilymh, 02-19-2016, 12:21 PM
1 response
3,368 views
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 Last Post gwilymh
by gwilymh
02-19-2016, 02:19 PM  
Closed: Illumina InterOp Parsers (perl and R) by mchen1
Started by mchen1, 05-24-2013, 08:46 AM
18 responses
99,085 views
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 Last Post GenoMax
by GenoMax
02-19-2016, 11:27 AM  
Too high adjusted P-values analysing RNA-seq count data with limma by IsBeth
Started by IsBeth, 02-19-2016, 11:10 AM
0 responses
3,238 views
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 Last Post IsBeth
by IsBeth
02-19-2016, 11:10 AM  
Using SRA-Blast tool (NCBI) by jimsac2016
Started by jimsac2016, 02-19-2016, 09:12 AM
2 responses
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 Last Post jimsac2016
by jimsac2016
02-19-2016, 09:53 AM  
TOPHAT2 vs STAR and CUFFMERGE vs CUFFCOMPARE: CASE STUDY by tonup69
Started by tonup69, 02-18-2016, 07:31 AM
6 responses
2,877 views
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 Last Post tonup69
by tonup69
02-19-2016, 08:01 AM  
Testing/benchmarking RNASeq DE tools by marcora
Started by marcora, 04-16-2011, 02:36 AM
21 responses
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 Last Post immpdaf
by immpdaf
02-19-2016, 04:46 AM  
miRNA-Seq alignment rate by epi
Started by epi, 02-18-2016, 08:20 AM
1 response
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 Last Post nucacidhunter
by nucacidhunter
02-18-2016, 03:26 PM  
DESeq baseVarFunc is not working by jay2008
Started by jay2008, 02-16-2016, 12:11 AM
5 responses
1,650 views
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 Last Post Wolfgang Huber
by Wolfgang Huber
02-18-2016, 12:32 PM  
Cuffmerge Exon vs Transcript output from Cufflinks Problem. by tonup69
Started by tonup69, 02-18-2016, 08:58 AM
0 responses
1,433 views
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 Last Post tonup69
by tonup69
02-18-2016, 08:58 AM  
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