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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Basic questions about fold change calculations by Jamiou
Started by Jamiou, 06-05-2015, 05:11 AM
3 responses
3,058 views
0 reactions
 Last Post dpryan
by dpryan
06-08-2015, 12:34 AM  
Pipeline for obtaining phased haplotype sequences w/out references by mharve9
Started by mharve9, 04-13-2014, 08:11 AM
3 responses
5,591 views
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 Last Post Sett
by Sett
06-07-2015, 11:34 PM  
bwa mem report only matches by jsved
Started by jsved, 06-03-2015, 06:27 AM
5 responses
1,888 views
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 Last Post jsved
by jsved
06-07-2015, 07:18 PM  
Add EnsemblID to cmmeRbund plots by Lalla
Started by Lalla, 06-07-2015, 11:14 AM
0 responses
1,246 views
0 reactions
 Last Post Lalla
by Lalla
06-07-2015, 11:14 AM  
Problem with generating consensus sequence using samtool mpileup by jimguo22
Started by jimguo22, 06-05-2015, 10:59 AM
3 responses
2,759 views
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 Last Post GenoMax
by GenoMax
06-06-2015, 10:39 AM  
CEGMA complete/partial depend on number of sequences? by reema
Started by reema, 06-02-2015, 07:23 AM
1 response
1,382 views
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 Last Post kbradnam
by kbradnam
06-06-2015, 10:07 AM  
bam transfer by cmccabe
Started by cmccabe, 06-05-2015, 08:30 AM
6 responses
1,816 views
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 Last Post cmccabe
by cmccabe
06-05-2015, 12:10 PM  
Need to extract fastq of specific region in bam file by jmartin
Started by jmartin, 06-04-2015, 01:52 PM
10 responses
5,409 views
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 Last Post GenoMax
by GenoMax
06-05-2015, 11:48 AM  
MACS "Exception: Can't detect format!" error by uchillama
Started by uchillama, 06-05-2015, 10:43 AM
0 responses
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 Last Post uchillama
by uchillama
06-05-2015, 10:43 AM  
Mpileup failing by kwyattm
Started by kwyattm, 06-03-2015, 07:29 AM
8 responses
1,744 views
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 Last Post kwyattm
by kwyattm
06-05-2015, 10:28 AM  
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