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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,259 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
how can I find a read in IGV? by hujiacun
Started by hujiacun, 04-01-2015, 12:53 AM
2 responses
13,245 views
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 Last Post GenoMax
by GenoMax
04-01-2015, 03:58 AM  
filter for sequences shared among replicates by criggs
Started by criggs, 03-31-2015, 06:51 PM
1 response
3,508 views
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 Last Post Brian Bushnell
by Brian Bushnell
03-31-2015, 09:46 PM  
Working with input files with Q64 and Q33 (GATK IndelRealigner) by woodydon
Started by woodydon, 03-29-2015, 10:33 PM
6 responses
2,273 views
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 Last Post Brian Bushnell
by Brian Bushnell
03-31-2015, 11:11 AM  
DESeq2 - finding influence of multiple parameters by MagdalenaZ
Started by MagdalenaZ, 03-30-2015, 10:02 AM
2 responses
2,088 views
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 Last Post MagdalenaZ
by MagdalenaZ
03-31-2015, 09:13 AM  
Problem using the Trinity script align_and_estimate_abundance.pl with RSEM by gwilymh
Started by gwilymh, 02-18-2015, 02:57 PM
3 responses
5,080 views
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 Last Post jordi
by jordi
03-31-2015, 07:42 AM  
De novo assembling and scaffolding by Rahul shelke
Started by Rahul shelke, 03-30-2015, 09:07 AM
1 response
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 Last Post bastianwur
by bastianwur
03-31-2015, 06:59 AM  
Codon Adaptation Index (CAI) for chicken by clarissaboschi
Started by clarissaboschi, 03-31-2015, 06:39 AM
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 Last Post clarissaboschi
by clarissaboschi
03-31-2015, 06:39 AM  
Convert SNP data to Haploview or PAML by bzg
Started by bzg, 03-31-2015, 01:03 AM
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 Last Post bzg
by bzg
03-31-2015, 01:03 AM  
BWA alignment using paired end reads from different lanes by deepue
Started by deepue, 03-30-2015, 11:46 PM
1 response
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 Last Post lindenb
by lindenb
03-31-2015, 12:40 AM  
TCGA sample type by Zhan yueping
Started by Zhan yueping, 03-28-2015, 09:12 PM
2 responses
3,601 views
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 Last Post Zhan yueping
by Zhan yueping
03-30-2015, 04:41 PM  
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