Is there any demo copy available for Newbler?
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MIRA should be nice alternative as well. I would go on wgs or MIRA ... or check velvet... in my mind these three are the most promising. I tested a bit CLC Genome Workbench and was not particularly impressed...
Originally posted by strob View PostIf you use 454 data you can just ask for the Newbler software. We did it this way and we received a DVD containing everything we need.
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Not so here in Chile...
Originally posted by strob View PostIf you use 454 data you can just ask for the Newbler software. We did it this way and we received a DVD containing everything we need.
---sram
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I really have no idea why Roche insist that only people with the sequencer are allowed the software... They are actively damaging their software's status among the bioinformatics community.
Seriously, what do they expect? Only sequencing centres will do bioinf analysis with 454 data? Clearly not. Therefore we are forced by Roche NOT to use Roche products... What kind of crazy logic is that?
Dear Roche,
Please make Newbler open source immediately.
Sincerely,
Someone who imagines that you actually care about improving your software and increasing its user base.
sram, try writing to the people who gave you the data, and ask them to ask Roach on your behalf.
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Originally posted by dan View PostI really have no idea why Roche insist that only people with the sequencer are allowed the software... They are actively damaging their software's status among the bioinformatics community.
Seriously, what do they expect? Only sequencing centres will do bioinf analysis with 454 data? Clearly not. Therefore we are forced by Roche NOT to use Roche products... What kind of crazy logic is that?
Dear Roche,
Please make Newbler open source immediately.
Sincerely,
Someone who imagines that you actually care about improving your software and increasing its user base.
sram, try writing to the people who gave you the data, and ask them to ask Roach on your behalf.
I totally agree with you about Roche should make this software available for academic research. For commercial uses is another thing.
---sram
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