Hi,
I am new to analyzing SoLiD sequencing data. In our data, which is a ChIP-SEQ for histone modifications,
the maximum peak length detected was about 150bp and;
there were only about 18 peaks that are more than 100 bp;
about 3500 peaks that are less than 100 bp, of which 3400 peaks are about 51bp.
I think this is unusual since histone pull down data should give wider peaks.
Am I correct, or is this kind of result possible in certain cases.
Thanks for your suggestions .
sridhar
I am new to analyzing SoLiD sequencing data. In our data, which is a ChIP-SEQ for histone modifications,
the maximum peak length detected was about 150bp and;
there were only about 18 peaks that are more than 100 bp;
about 3500 peaks that are less than 100 bp, of which 3400 peaks are about 51bp.
I think this is unusual since histone pull down data should give wider peaks.
Am I correct, or is this kind of result possible in certain cases.
Thanks for your suggestions .
sridhar
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