The purpose is to annotate de-novo bacteria genome assembly. I see there are many tools, like GeneMark, RAST, etc. Does any one have any recommendation, for de-novo annotation, and comparative annotation, respectively? Thanks a lot.
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For individual bacterial genomes NCBI Prokaryotic Genome Annotation Pipeline: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
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Originally posted by GenoMax View PostFor individual bacterial genomes NCBI Prokaryotic Genome Annotation Pipeline: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
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I've used Artemis for annotation once... works very well and has some handy features that facilitates all the process.
Take a look at http://www.sanger.ac.uk/resources/software/artemis/
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Originally posted by condomitti View PostI've used Artemis for annotation once... works very well and has some handy features that facilitates all the process.
Take a look at http://www.sanger.ac.uk/resources/software/artemis/
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