Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Problem with MEME installation

    Has anyone else installed MEME recently? i.e. http://meme.sdsc.edu/meme/intro.html

    When I run the installation at one point it calls for a URL which doesn't exist. (http://meme.nbcr.net/memepurge). This version of MEME was only put up in february, but I've tried older versions and the same problem was there.

    This isn't something that the user has to input or anything, it's handled automatically. Anyway I've followed the steps of the installation but it isn't working. I've included a link to an screen cap of me running the installation in terminal on ubuntu. (http://imgur.com/kakBq)

    Here is the link to the installation step http://meme.sdsc.edu/meme/doc/meme-install.html#quick

    Anyone able to help?

  • #2
    adding meme to path

    Hi!
    Can anyone help me to install MEME, please?
    I had a problem when I followed the instructions from here:


    1)
    $ tar zxf meme_VERSION.tar.gz
    $ cd meme_VERSION
    $ ./configure --prefix=$HOME/meme --with-url=http://meme.nbcr.net/meme
    $ make
    $ make test
    $ make install
    2)
    Edit your shell configuration file to add
    $HOME/meme/bin to your shell's path.

    I failed at the 2) part. I typed:
    $ export PATH=$PATH:/$HOME/meme/bin

    so now my path looks like this:
    $ echo $PATH
    /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/home/sonja/meme/bin


    but when I type
    $ meme
    I get the response:
    bash: /home/sonja/meme/bin/meme: /bin/csh: bad interpreter: No such file or directory


    I am probably having a basic problem of adding something to my path... Can anyone help, please?

    Comment


    • #3
      Install the csh bash. In Ubuntu you can do that by:

      sudo apt-get install csh

      Afterwards it worked for me (only single core though).

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin


        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist on Modified Bases...
        Yesterday, 07:01 AM
      • seqadmin
        Current Approaches to Protein Sequencing
        by seqadmin


        Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
        04-04-2024, 04:25 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, 04-11-2024, 12:08 PM
      0 responses
      51 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 10:19 PM
      0 responses
      50 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 09:21 AM
      0 responses
      44 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-04-2024, 09:00 AM
      0 responses
      55 views
      0 likes
      Last Post seqadmin  
      Working...
      X