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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc
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Started by laura, 05-09-2011, 04:42 AM
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35 responses
107,327 views
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by laura
12-05-2013, 02:37 AM
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Started by sci_guy, 01-23-2008, 11:19 PM
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236 responses
683,015 views
1 reaction
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by ECO
12-25-2009, 06:45 PM
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Started by ElenaN, 07-03-2013, 01:39 AM
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1 response
3,931 views
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by dkoboldt
09-03-2013, 07:33 AM
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Started by ckr123, 04-17-2013, 09:40 AM
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1 response
3,132 views
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by dkoboldt
09-03-2013, 07:25 AM
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Started by puggie, 09-02-2013, 09:52 AM
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4 responses
3,494 views
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by dariober
09-03-2013, 06:50 AM
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Started by pavan, 09-03-2013, 02:14 AM
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3 responses
2,305 views
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by krobison
09-03-2013, 06:42 AM
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Started by lre1234, 09-03-2013, 06:19 AM
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0 responses
2,292 views
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by lre1234
09-03-2013, 06:19 AM
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Started by ketan_bnf, 01-28-2011, 03:13 AM
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4 responses
27,872 views
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by dagarfield
09-03-2013, 04:43 AM
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Started by flyingoyster, 09-01-2013, 10:17 PM
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5 responses
4,397 views
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by flyingoyster
09-03-2013, 12:21 AM
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Started by ninad, 09-02-2013, 07:59 PM
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0 responses
1,943 views
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by ninad
09-02-2013, 07:59 PM
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Started by huzefa_mehta, 08-29-2013, 01:57 PM
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6 responses
5,005 views
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by ymc
09-02-2013, 07:43 PM
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Started by WaitingNail, 09-02-2013, 06:49 PM
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1 response
8,363 views
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Last Post
by ymc
09-02-2013, 07:40 PM
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by GATTACATLove this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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Channel: Articles
07-01-2026, 11:43 AM -
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by SEQadmin2
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...-
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by SEQadmin2
Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
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06-02-2026, 10:05 AM -
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Started by SEQadmin2, 07-02-2026, 11:08 AM
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by SEQadmin2
07-02-2026, 11:08 AM
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Started by SEQadmin2, 06-30-2026, 05:37 AM
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by SEQadmin2
06-30-2026, 05:37 AM
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Started by SEQadmin2, 06-26-2026, 11:10 AM
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by SEQadmin2
06-26-2026, 11:10 AM
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