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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Trimmomatic but no trimming by Saeideh
Started by Saeideh, 09-26-2015, 11:03 PM
6 responses
3,310 views
0 reactions
 Last Post Saeideh
by Saeideh
09-28-2015, 11:40 PM  
Genome assembly workflows for NGS by elisacarli
Started by elisacarli, 09-28-2015, 06:24 AM
2 responses
1,354 views
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 Last Post SylvainL
by SylvainL
09-28-2015, 11:32 PM  
bedtools sort by faidx by cmccabe
Started by cmccabe, 09-28-2015, 11:15 AM
3 responses
2,968 views
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 Last Post HESmith
by HESmith
09-28-2015, 12:42 PM  
Error in normalizeDoubleBracketSubscript by anagari
Started by anagari, 09-28-2015, 12:03 PM
0 responses
2,773 views
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 Last Post anagari
by anagari
09-28-2015, 12:03 PM  
sorting a BAM produces a smaller file than the original by oiiio
Started by oiiio, 08-23-2011, 06:53 PM
18 responses
24,186 views
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 Last Post gringer
by gringer
09-28-2015, 11:57 AM  
DESeq2 multivariate analysis - retrieving certain stats by Boel
Started by Boel, 09-28-2015, 11:23 AM
0 responses
2,466 views
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 Last Post Boel
by Boel
09-28-2015, 11:23 AM  
cummeRbund error by dianaabouelhassan
Started by dianaabouelhassan, 09-28-2015, 08:31 AM
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 Last Post dianaabouelhassan
by dianaabouelhassan
09-28-2015, 08:31 AM  
correlation in per base sequence quality profiles of multiplexed samples. by sridharacharya
Started by sridharacharya, 09-28-2015, 07:11 AM
3 responses
1,388 views
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 Last Post GenoMax
by GenoMax
09-28-2015, 07:49 AM  
Newbler default settings? -- Any papers by SDPA_Pet
Started by SDPA_Pet, 09-27-2015, 10:16 AM
12 responses
2,737 views
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 Last Post SDPA_Pet
by SDPA_Pet
09-28-2015, 07:31 AM  
Questions about Blast on Unix Shell by Naphtap
Started by Naphtap, 09-23-2015, 08:05 AM
21 responses
4,669 views
0 reactions
 Last Post GenoMax
by GenoMax
09-28-2015, 04:04 AM  
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