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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Need help understanding Maximum Parsimony and Maximum Likelihood by Giftedzipper
Started by Giftedzipper, 01-09-2014, 09:08 PM
0 responses
1,537 views
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 Last Post Giftedzipper
by Giftedzipper
01-09-2014, 09:08 PM  
ObStruct - a new tool for population genetics by Vel
Started by Vel, 01-09-2014, 09:02 PM
0 responses
1,501 views
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 Last Post Vel
by Vel
01-09-2014, 09:02 PM  
Question about Delta-Filter for MUMmer by Brett Bowman
Started by Brett Bowman, 01-09-2014, 05:41 PM
1 response
2,501 views
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 Last Post andylemire
by andylemire
01-09-2014, 06:10 PM  
varScan output question by karl_s
Started by karl_s, 01-09-2014, 01:30 PM
0 responses
1,250 views
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 Last Post karl_s
by karl_s
01-09-2014, 01:30 PM  
DeNovoGear - Detecting denovo SNPs and INDELs in trios using NGS data. by trackavinash
Started by trackavinash, 01-07-2013, 11:37 AM
2 responses
2,737 views
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 Last Post Richard Finney
by Richard Finney
01-09-2014, 11:49 AM  
Soap de novo trans parameters by RyNkA
Started by RyNkA, 01-08-2014, 03:09 AM
3 responses
2,536 views
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 Last Post jebowers
by jebowers
01-09-2014, 08:45 AM  
Tophat Fusion Post Processing filtering out confirmed positive fusion by mknut
Started by mknut, 07-16-2013, 02:53 AM
2 responses
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 Last Post mknut
by mknut
01-09-2014, 08:00 AM  
Even K-mer sizes in ABySS by StefanP
Started by StefanP, 01-09-2014, 07:19 AM
0 responses
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 Last Post StefanP
by StefanP
01-09-2014, 07:19 AM  
BWA manual's -q description too technical by CHRYSES
Started by CHRYSES, 08-03-2010, 06:22 AM
13 responses
17,083 views
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 Last Post Zigster
by Zigster
01-09-2014, 06:56 AM  
Finding contig repeat counts by mapping contigs to the reference genome by misagh
Started by misagh, 04-26-2013, 08:12 PM
1 response
3,808 views
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 Last Post bambus
by bambus
01-09-2014, 06:41 AM  
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