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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
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 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
cufflinks assembling problem by awayihaha
Started by awayihaha, 11-11-2014, 04:42 PM
1 response
1,532 views
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 Last Post awayihaha
by awayihaha
11-12-2014, 05:27 PM  
log2(FC) +/-inf. What do you do with this genes? by mpalegre
Started by mpalegre, 11-12-2014, 09:45 AM
10 responses
7,097 views
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 Last Post sdriscoll
by sdriscoll
11-12-2014, 01:18 PM  
fold change for rna seq data without replicates by Francy87
Started by Francy87, 11-12-2014, 10:47 AM
0 responses
2,093 views
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 Last Post Francy87
by Francy87
11-12-2014, 10:47 AM  
Insert size distribution for SV detection by BnaT
Started by BnaT, 11-12-2014, 05:05 AM
1 response
1,513 views
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 Last Post Brian Bushnell
by Brian Bushnell
11-12-2014, 08:59 AM  
VEP variant effect predictor by DNAjunk
Started by DNAjunk, 11-12-2014, 07:57 AM
0 responses
1,910 views
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 Last Post DNAjunk
by DNAjunk
11-12-2014, 07:57 AM  
HTseq-count error: mate pairs cannot be matched by paulb5677
Started by paulb5677, 11-12-2014, 07:25 AM
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 Last Post paulb5677
by paulb5677
11-12-2014, 07:25 AM  
Modify GENCODE GTF File for HTSeq by Fernas
Started by Fernas, 11-12-2014, 05:18 AM
8 responses
3,100 views
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 Last Post Fernas
by Fernas
11-12-2014, 06:23 AM  
Ambiguous Reads Treatment by HTSeq-Count by Fernas
Started by Fernas, 11-12-2014, 06:05 AM
2 responses
4,241 views
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 Last Post Fernas
by Fernas
11-12-2014, 06:18 AM  
SNP with contigs by aimc
Started by aimc, 11-12-2014, 05:25 AM
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 Last Post aimc
by aimc
11-12-2014, 05:25 AM  
how to prepare/download Rfam 12.0 gff/gtf ? by unique379
Started by unique379, 11-12-2014, 04:10 AM
1 response
1,668 views
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 Last Post GenoMax
by GenoMax
11-12-2014, 05:22 AM  
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