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Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Closed, Sticky: New Resources for 1000 Genomes by laura
Started by laura, 05-09-2011, 04:42 AM
35 responses
108,292 views
0 reactions
 Last Post laura
by laura
12-05-2013, 02:37 AM  
Closed, Sticky: Software packages for next gen sequence analysis by sci_guy
Started by sci_guy, 01-23-2008, 11:19 PM
236 responses
690,260 views
1 reaction
 Last Post ECO
by ECO
12-25-2009, 06:45 PM  
Personal Genome Constructor (vcf2diploid tool) - HELP by adurasiwam3
Started by adurasiwam3, 06-18-2012, 08:18 PM
2 responses
2,230 views
0 reactions
 Last Post upendra_35
by upendra_35
05-05-2014, 05:18 PM  
problem in variant calling with rna-seq by bongbimit
Started by bongbimit, 05-05-2014, 01:55 PM
3 responses
1,601 views
0 reactions
 Last Post Brian Bushnell
by Brian Bushnell
05-05-2014, 03:37 PM  
Bowtie "reads processed" higher than it should be by biocomputer
Started by biocomputer, 05-05-2014, 02:46 PM
0 responses
955 views
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 Last Post biocomputer
by biocomputer
05-05-2014, 02:46 PM  
editing header files by sasignor
Started by sasignor, 05-04-2014, 01:42 PM
3 responses
2,167 views
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 Last Post dpryan
by dpryan
05-05-2014, 01:00 PM  
No reads mapped using BWA SOLiD by lanner
Started by lanner, 05-05-2014, 11:57 AM
1 response
1,828 views
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 Last Post lanner
by lanner
05-05-2014, 11:58 AM  
Questions about .fastq format and size by lanner
Started by lanner, 04-28-2014, 04:19 PM
17 responses
5,178 views
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 Last Post lanner
by lanner
05-05-2014, 11:51 AM  
extracting uniquely mappable read positions bam file by tahamasoodi
Started by tahamasoodi, 03-05-2014, 06:42 AM
12 responses
3,513 views
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 Last Post lethalfang
by lethalfang
05-05-2014, 09:39 AM  
Is there easy way to create the Genbank file by bagaric
Started by bagaric, 05-01-2014, 10:56 PM
3 responses
4,155 views
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 Last Post maubp
by maubp
05-05-2014, 08:49 AM  
Tophat library type and pair orientation for illumina data by Victory
Started by Victory, 07-20-2012, 03:21 PM
1 response
2,348 views
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 Last Post tinkering
by tinkering
05-05-2014, 08:46 AM  
Online tools to generate count tables from sam/bam files by lanner
Started by lanner, 05-04-2014, 01:24 PM
4 responses
3,687 views
0 reactions
 Last Post maubp
by maubp
05-05-2014, 08:26 AM  
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